J3_5U9F_007
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 5U9F|1|01|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5U9F_007 not in the Motif Atlas
- Homologous match to J3_5J7L_042
- Geometric discrepancy: 0.1497
- The information below is about J3_5J7L_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
5U9F|1|01|C|1306
5U9F|1|01|A|1307
5U9F|1|01|A|1308
5U9F|1|01|G|1309
*
5U9F|1|01|C|1605
5U9F|1|01|C|1606
5U9F|1|01|C|1607
5U9F|1|01|A|1608
5U9F|1|01|A|1609
5U9F|1|01|A|1610
5U9F|1|01|C|1611
*
5U9F|1|01|G|1620
5U9F|1|01|U|1621
5U9F|1|01|G|1622
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 32
- 50S ribosomal protein L34
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