3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
5U9F|1|01|U|2833, 5U9F|1|01|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5U9F_013 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1812
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

5U9F|1|01|G|2812
5U9F|1|01|A|2813
5U9F|1|01|A|2814
5U9F|1|01|C|2815
*
5U9F|1|01|G|2831
5U9F|1|01|U|2832
5U9F|1|01|U|2833
5U9F|1|01|G|2834
5U9F|1|01|A|2835
5U9F|1|01|U|2836
*
5U9F|1|01|A|2882
5U9F|1|01|A|2883
5U9F|1|01|U|2884
5U9F|1|01|G|2885
5U9F|1|01|A|2886
5U9F|1|01|A|2887
5U9F|1|01|C|2888

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 05
50S ribosomal protein L3
Chain 16
50S ribosomal protein L17
Chain 21
50S ribosomal protein L22
Chain 30
50S ribosomal protein L32

Coloring options:


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