3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
5U9F|1|A|A|975, 5U9F|1|A|G|976, 5U9F|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5U9F_021 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0969
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5U9F|1|A|U|955
5U9F|1|A|U|956
5U9F|1|A|U|957
5U9F|1|A|A|958
5U9F|1|A|A|959
5U9F|1|A|U|960
5U9F|1|A|U|961
5U9F|1|A|C|962
*
5U9F|1|A|G|973
5U9F|1|A|A|974
5U9F|1|A|A|975
5U9F|1|A|G|976
5U9F|1|A|A|977
5U9F|1|A|A|978
5U9F|1|A|C|979
5U9F|1|A|C|980
5U9F|1|A|U|981
5U9F|1|A|U|982
5U9F|1|A|A|983
5U9F|1|A|C|984
*
5U9F|1|A|G|1221
5U9F|1|A|G|1222
5U9F|1|A|C|1223
5U9F|1|A|U|1224
5U9F|1|A|A|1225

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14
Chain S
30S ribosomal protein S19
Chain Z
Peptide chain release factor RF2

Coloring options:


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