3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5U9F_023 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1479
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_01343.1
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5U9F|1|A|C|1063
5U9F|1|A|G|1064
5U9F|1|A|U|1065
5U9F|1|A|C|1066
5U9F|1|A|A|1067
5U9F|1|A|G|1068
*
5U9F|1|A|C|1107
5U9F|1|A|G|1108
5U9F|1|A|C|1109
5U9F|1|A|A|1110
5U9F|1|A|A|1111
5U9F|1|A|C|1112
5U9F|1|A|C|1113
*
5U9F|1|A|G|1187
5U9F|1|A|A|1188
5U9F|1|A|U|1189
5U9F|1|A|G|1190
5U9F|1|A|A|1191
5U9F|1|A|C|1192
5U9F|1|A|G|1193

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain C
30S ribosomal protein S3
Chain E
30S ribosomal protein S5
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14
Chain Y
Alternative ribosome-rescue factor A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3243 s