J3_5UQ7_010
3D structure
- PDB id
- 5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 5UQ7|1|A|C|2226
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UQ7_010 not in the Motif Atlas
- Homologous match to J3_9DFE_014
- Geometric discrepancy: 0.408
- The information below is about J3_9DFE_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5UQ7|1|A|U|2091
5UQ7|1|A|U|2092
5UQ7|1|A|G|2093
*
5UQ7|1|A|C|2196
5UQ7|1|A|U|2197
5UQ7|1|A|A|2198
5UQ7|1|A|A|2199
5UQ7|1|A|C|2200
*
5UQ7|1|A|G|2223
5UQ7|1|A|G|2224
5UQ7|1|A|A|2225
5UQ7|1|A|C|2226
5UQ7|1|A|A|2227
5UQ7|1|A|G|2228
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
- Chain D
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L9
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