J3_5UQ7_018
3D structure
- PDB id
- 5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 5UQ7|1|a|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UQ7_018 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1489
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5UQ7|1|a|U|672
5UQ7|1|a|G|673
*
5UQ7|1|a|C|717
5UQ7|1|a|G|718
5UQ7|1|a|C|719
5UQ7|1|a|C|720
5UQ7|1|a|G|721
5UQ7|1|a|A|722
5UQ7|1|a|U|723
5UQ7|1|a|G|724
5UQ7|1|a|G|725
*
5UQ7|1|a|C|732
5UQ7|1|a|A|733
5UQ7|1|a|G|734
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L2
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain o
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S18
- Chain x
- DnaX ribosomal frameshifting element
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