J3_5UQ8_003
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 5UQ8|1|A|U|273|||B
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UQ8_003 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.1366
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5UQ8|1|A|U|269
5UQ8|1|A|A|270
5UQ8|1|A|A|271
5UQ8|1|A|A|272|||A
5UQ8|1|A|C|272|||B
*
5UQ8|1|A|G|272|||V
5UQ8|1|A|G|272|||W
5UQ8|1|A|G|272|||X
5UQ8|1|A|U|272|||Y
5UQ8|1|A|C|272|||Z
5UQ8|1|A|G|273|||A
5UQ8|1|A|U|273|||B
5UQ8|1|A|G|273|||C
*
5UQ8|1|A|C|366
5UQ8|1|A|G|370
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain I
- 50S ribosomal protein L9
Coloring options: