J3_5UQ8_014

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CGGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ8|1|A|C|2789
5UQ8|1|A|G|2792
*
5UQ8|1|A|C|2804
5UQ8|1|A|G|2805
5UQ8|1|A|G|2807
5UQ8|1|A|U|2808
5UQ8|1|A|A|2809
5UQ8|1|A|A|2810
5UQ8|1|A|G|2811
*
5UQ8|1|A|C|2889
5UQ8|1|A|G|2891
5UQ8|1|A|A|2892
5UQ8|1|A|G|2893
5UQ8|1|A|G|2894

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3