J3_5UQ8_024

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UQ8_024 not in the Motif Atlas

Homologous match to J3_6CZR_021

Geometric discrepancy: 0.159

The information below is about J3_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ8|1|a|C|990
5UQ8|1|a|U|991
5UQ8|1|a|U|992
5UQ8|1|a|G|993
*
5UQ8|1|a|C|1045
5UQ8|1|a|A|1046
5UQ8|1|a|G|1047
*
5UQ8|1|a|C|1210
5UQ8|1|a|U|1211
5UQ8|1|a|U|1212
5UQ8|1|a|A|1213
5UQ8|1|a|C|1214
5UQ8|1|a|G|1215

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z