J3_5UQ8_028
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGC*GGAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- 5UQ8|1|a|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UQ8_028 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.2306
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5UQ8|1|a|C|1116
5UQ8|1|a|G|1117
5UQ8|1|a|C|1118
*
5UQ8|1|a|G|1155
5UQ8|1|a|G|1156
5UQ8|1|a|A|1157
5UQ8|1|a|C|1158
*
5UQ8|1|a|G|1181
5UQ8|1|a|G|1182
5UQ8|1|a|A|1183
5UQ8|1|a|G|1184
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain i
- 30S ribosomal protein S9
- Chain n
- 30S ribosomal protein S14 type Z
Coloring options: