3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAAC*GGUGCC*GGAGCC
Length
17 nucleotides
Bulged bases
5UQ8|1|a|G|1003
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UQ8_036 not in the Motif Atlas
Homologous match to J3_6CZR_022
Geometric discrepancy: 0.5751
The information below is about J3_6CZR_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5UQ8|1|a|G|1002
5UQ8|1|a|G|1003
5UQ8|1|a|A|1004
5UQ8|1|a|A|1005
5UQ8|1|a|C|1006
*
5UQ8|1|a|G|1023
5UQ8|1|a|G|1024
5UQ8|1|a|U|1025
5UQ8|1|a|G|1026
5UQ8|1|a|C|1027
5UQ8|1|a|C|1028
*
5UQ8|1|a|G|1033
5UQ8|1|a|G|1034
5UQ8|1|a|A|1035
5UQ8|1|a|G|1036
5UQ8|1|a|C|1037
5UQ8|1|a|C|1038

Current chains

Chain a
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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