J3_5UYK_009

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYK_009 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0985

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5UYK|1|01|C|2091
5UYK|1|01|U|2092
5UYK|1|01|G|2093
*
5UYK|1|01|C|2196
5UYK|1|01|U|2197
5UYK|1|01|A|2198
5UYK|1|01|A|2199
5UYK|1|01|C|2200
*
5UYK|1|01|G|2223
5UYK|1|01|G|2224
5UYK|1|01|A|2225
5UYK|1|01|C|2226
5UYK|1|01|A|2227
5UYK|1|01|G|2228

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain 09

50S ribosomal protein L9

Chain 26

50S ribosomal protein L28