3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
5UYK|1|A|A|958, 5UYK|1|A|A|975, 5UYK|1|A|G|976, 5UYK|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UYK_021 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.1161
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5UYK|1|A|U|955
5UYK|1|A|U|956
5UYK|1|A|U|957
5UYK|1|A|A|958
5UYK|1|A|A|959
5UYK|1|A|U|960
5UYK|1|A|U|961
5UYK|1|A|C|962
*
5UYK|1|A|G|973
5UYK|1|A|A|974
5UYK|1|A|A|975
5UYK|1|A|G|976
5UYK|1|A|A|977
5UYK|1|A|A|978
5UYK|1|A|C|979
5UYK|1|A|C|980
5UYK|1|A|U|981
5UYK|1|A|U|982
5UYK|1|A|A|983
5UYK|1|A|C|984
*
5UYK|1|A|G|1221
5UYK|1|A|G|1222
5UYK|1|A|C|1223
5UYK|1|A|U|1224
5UYK|1|A|A|1225

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14
Chain S
30S ribosomal protein S19
Chain Y
Transfer RNA; tRNA

Coloring options:


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