3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
5UYK|1|01|A|504, 5UYK|1|01|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UYK_027 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1196
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5UYK|1|01|G|30
5UYK|1|01|C|31
*
5UYK|1|01|G|474
5UYK|1|01|C|475
5UYK|1|01|G|476
5UYK|1|01|A|477
5UYK|1|01|A|478
5UYK|1|01|A|479
5UYK|1|01|A|480
5UYK|1|01|G|481
5UYK|1|01|A|482
5UYK|1|01|A|483
5UYK|1|01|C|484
*
5UYK|1|01|G|496
5UYK|1|01|A|497
5UYK|1|01|G|498
5UYK|1|01|U|499
5UYK|1|01|G|500
5UYK|1|01|A|501
5UYK|1|01|A|502
5UYK|1|01|A|503
5UYK|1|01|A|504
5UYK|1|01|A|505
5UYK|1|01|G|506
5UYK|1|01|A|507
5UYK|1|01|A|508
5UYK|1|01|C|509
5UYK|1|01|C|510

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L20
Chain 21
50S ribosomal protein L22
Chain 23
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2976 s