3D structure

PDB id
5UYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UYL_024 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.1313
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5UYL|1|A|C|1063
5UYL|1|A|G|1064
5UYL|1|A|U|1065
5UYL|1|A|C|1066
5UYL|1|A|A|1067
5UYL|1|A|G|1068
*
5UYL|1|A|C|1107
5UYL|1|A|G|1108
5UYL|1|A|C|1109
5UYL|1|A|A|1110
5UYL|1|A|A|1111
5UYL|1|A|C|1112
5UYL|1|A|C|1113
*
5UYL|1|A|G|1187
5UYL|1|A|A|1188
5UYL|1|A|U|1189
5UYL|1|A|G|1190
5UYL|1|A|A|1191
5UYL|1|A|C|1192
5UYL|1|A|G|1193

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain E
30S ribosomal protein S5
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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