J3_5UYM_013
3D structure
- PDB id
- 5UYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 5UYM|1|01|U|2833, 5UYM|1|01|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UYM_013 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1546
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5UYM|1|01|G|2812
5UYM|1|01|A|2813
5UYM|1|01|A|2814
5UYM|1|01|C|2815
*
5UYM|1|01|G|2831
5UYM|1|01|U|2832
5UYM|1|01|U|2833
5UYM|1|01|G|2834
5UYM|1|01|A|2835
5UYM|1|01|U|2836
*
5UYM|1|01|A|2882
5UYM|1|01|A|2883
5UYM|1|01|U|2884
5UYM|1|01|G|2885
5UYM|1|01|A|2886
5UYM|1|01|A|2887
5UYM|1|01|C|2888
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 16
- 50S ribosomal protein L17
- Chain 21
- 50S ribosomal protein L22
- Chain 30
- 50S ribosomal protein L32
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