J3_5UYM_024
3D structure
- PDB id
- 5UYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UYM_024 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.101
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5UYM|1|A|U|1073
5UYM|1|A|G|1074
*
5UYM|1|A|U|1083
5UYM|1|A|G|1084
5UYM|1|A|U|1085
5UYM|1|A|U|1086
5UYM|1|A|G|1087
*
5UYM|1|A|C|1098
5UYM|1|A|G|1099
5UYM|1|A|C|1100
5UYM|1|A|A|1101
5UYM|1|A|A|1102
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- 30S ribosomal protein S5
- Chain U
- 30S ribosomal protein S21
Coloring options: