3D structure

PDB id
5UYM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCCUAAC*GGGGAAUAU*AGC
Length
19 nucleotides
Bulged bases
5UYM|1|A|A|50, 5UYM|1|A|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UYM_033 not in the Motif Atlas
Homologous match to J3_4LFB_014
Geometric discrepancy: 0.0914
The information below is about J3_4LFB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_63856.1
Basepair signature
cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

5UYM|1|A|G|46
5UYM|1|A|C|47
5UYM|1|A|C|48
5UYM|1|A|U|49
5UYM|1|A|A|50
5UYM|1|A|A|51
5UYM|1|A|C|52
*
5UYM|1|A|G|359
5UYM|1|A|G|360
5UYM|1|A|G|361
5UYM|1|A|G|362
5UYM|1|A|A|363
5UYM|1|A|A|364
5UYM|1|A|U|365
5UYM|1|A|A|366
5UYM|1|A|U|367
*
5UYM|1|A|A|393
5UYM|1|A|G|394
5UYM|1|A|C|395

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain P
30S ribosomal protein S16
Chain Y
Transfer RNA; tRNA
Chain Z
Elongation factor Tu 2

Coloring options:


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