J3_5UYN_030

3D structure

PDB id

5UYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5UYN|1|01|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYN_030 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1526

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5UYN|1|01|G|297
5UYN|1|01|G|298
5UYN|1|01|A|299
5UYN|1|01|A|300
5UYN|1|01|G|301
*
5UYN|1|01|C|316
5UYN|1|01|G|317
5UYN|1|01|C|318
5UYN|1|01|G|319
5UYN|1|01|A|320
5UYN|1|01|U|321
5UYN|1|01|A|322
5UYN|1|01|C|323
5UYN|1|01|A|324
5UYN|1|01|G|325
*
5UYN|1|01|C|337
5UYN|1|01|G|338
5UYN|1|01|U|339
5UYN|1|01|A|340
5UYN|1|01|C|341

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 23

50S ribosomal protein L24