J3_5UYP_003

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5UYP|1|01|U|686, 5UYP|1|01|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYP_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3261

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5UYP|1|01|U|683
5UYP|1|01|G|684
5UYP|1|01|A|685
5UYP|1|01|U|686
5UYP|1|01|C|687
5UYP|1|01|U|688
5UYP|1|01|A|689
*
5UYP|1|01|U|773
5UYP|1|01|G|774
5UYP|1|01|G|775
*
5UYP|1|01|C|791
5UYP|1|01|A|792
5UYP|1|01|A|793
5UYP|1|01|A|794

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain 32

50S ribosomal protein L34