J3_5UYP_029
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5UYP|1|01|U|34, 5UYP|1|01|U|448, 5UYP|1|01|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UYP_029 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1312
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5UYP|1|01|C|32
5UYP|1|01|C|33
5UYP|1|01|U|34
5UYP|1|01|G|35
*
5UYP|1|01|C|445
5UYP|1|01|G|446
5UYP|1|01|A|447
5UYP|1|01|U|448
5UYP|1|01|A|449
5UYP|1|01|G|450
5UYP|1|01|U|451
5UYP|1|01|G|452
5UYP|1|01|A|453
5UYP|1|01|A|454
5UYP|1|01|C|455
5UYP|1|01|C|456
5UYP|1|01|A|457
5UYP|1|01|G|458
5UYP|1|01|U|459
5UYP|1|01|A|460
5UYP|1|01|C|461
*
5UYP|1|01|G|468
5UYP|1|01|G|469
5UYP|1|01|A|470
5UYP|1|01|A|471
5UYP|1|01|A|472
5UYP|1|01|G|473
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 06
- 50S ribosomal protein L4
- Chain 19
- 50S ribosomal protein L20
- Chain 22
- 50S ribosomal protein L23
- Chain 32
- 50S ribosomal protein L34
Coloring options: