J3_5UYQ_004

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYQ_004 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1086

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5UYQ|1|01|C|698
5UYQ|1|01|A|699
5UYQ|1|01|G|700
*
5UYQ|1|01|C|732
5UYQ|1|01|G|733
5UYQ|1|01|A|734
5UYQ|1|01|A|735
5UYQ|1|01|C|736
*
5UYQ|1|01|G|760
5UYQ|1|01|A|761
5UYQ|1|01|U|762
5UYQ|1|01|G|763

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2