J3_5UYQ_007

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5UYQ|1|01|A|1609, 5UYQ|1|01|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYQ_007 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.157

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

5UYQ|1|01|C|1306
5UYQ|1|01|A|1307
5UYQ|1|01|A|1308
5UYQ|1|01|G|1309
*
5UYQ|1|01|C|1605
5UYQ|1|01|C|1606
5UYQ|1|01|C|1607
5UYQ|1|01|A|1608
5UYQ|1|01|A|1609
5UYQ|1|01|A|1610
5UYQ|1|01|C|1611
*
5UYQ|1|01|G|1620
5UYQ|1|01|U|1621
5UYQ|1|01|G|1622

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 32

50S ribosomal protein L34