J3_5UYQ_009

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYQ_009 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1296

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5UYQ|1|01|C|2091
5UYQ|1|01|U|2092
5UYQ|1|01|G|2093
*
5UYQ|1|01|C|2196
5UYQ|1|01|U|2197
5UYQ|1|01|A|2198
5UYQ|1|01|A|2199
5UYQ|1|01|C|2200
*
5UYQ|1|01|G|2223
5UYQ|1|01|G|2224
5UYQ|1|01|A|2225
5UYQ|1|01|C|2226
5UYQ|1|01|A|2227
5UYQ|1|01|G|2228

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain 09

50S ribosomal protein L9

Chain 26

50S ribosomal protein L28