J3_5UYQ_022

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

5UYQ|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYQ_022 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1505

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5UYQ|1|A|C|990
5UYQ|1|A|U|991
5UYQ|1|A|U|992
5UYQ|1|A|G|993
*
5UYQ|1|A|C|1045
5UYQ|1|A|A|1046
5UYQ|1|A|G|1047
*
5UYQ|1|A|C|1210
5UYQ|1|A|U|1211
5UYQ|1|A|U|1212
5UYQ|1|A|A|1213
5UYQ|1|A|C|1214
5UYQ|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14