J3_5UZ4_017

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5UZ4|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UZ4_017 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.222

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5UZ4|1|A|C|990
5UZ4|1|A|U|991
5UZ4|1|A|U|992
5UZ4|1|A|G|993
5UZ4|1|A|A|994
5UZ4|1|A|C|995
5UZ4|1|A|A|996
5UZ4|1|A|U|997
*
5UZ4|1|A|A|1044
5UZ4|1|A|C|1045
5UZ4|1|A|A|1046
5UZ4|1|A|G|1047
*
5UZ4|1|A|C|1210
5UZ4|1|A|U|1211
5UZ4|1|A|U|1212
5UZ4|1|A|A|1213
5UZ4|1|A|C|1214
5UZ4|1|A|G|1215

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S ribosomal protein S14