J3_5V3I_002

3D structure

PDB id

5V3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - wild-type C634

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GAAC*GG*CACAAGC

Length

13 nucleotides

Bulged bases

5V3I|1|A|A|657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V3I_002 not in the Motif Atlas

Geometric match to J3_4R4V_002

Geometric discrepancy: 0.0747

The information below is about J3_4R4V_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_51910.1

Basepair signature

cWW-F-cWW-tWS-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5V3I|1|A|G|655
5V3I|1|A|A|656
5V3I|1|A|A|657
5V3I|1|A|C|658
*
5V3I|1|A|G|716
5V3I|1|A|G|717
*
5V3I|1|A|C|758
5V3I|1|A|A|759
5V3I|1|A|C|760
5V3I|1|A|A|761
5V3I|1|A|A|762
5V3I|1|A|G|763
5V3I|1|A|C|764

Current chains

Chain A

VS Ribozyme RNA

Nearby chains