J3_5V3I_003

3D structure

PDB id

5V3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - wild-type C634

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CUCC*GUCG*UGUGAUUG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V3I_003 not in the Motif Atlas

Geometric match to J3_4R4V_003

Geometric discrepancy: 0.0779

The information below is about J3_4R4V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98484.1

Basepair signature

cWW-F-F-tSH-cHW-F-cWW-tSS-cSS-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5V3I|1|A|C|663
5V3I|1|A|U|664
5V3I|1|A|C|665
5V3I|1|A|C|666
*
5V3I|1|A|G|680
5V3I|1|A|U|681
5V3I|1|A|C|682
5V3I|1|A|G|683
*
5V3I|1|A|U|703
5V3I|1|A|G|704
5V3I|1|A|U|705
5V3I|1|A|G|706
5V3I|1|A|A|707
5V3I|1|A|U|708
5V3I|1|A|U|709
5V3I|1|A|G|710

Current chains

Chain A

VS Ribozyme RNA

Nearby chains