J3_5V8I_004

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5V8I|1|1A|G|686, 5V8I|1|1A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V8I_004 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0575

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5V8I|1|1A|C|683
5V8I|1|1A|G|684
5V8I|1|1A|A|685
5V8I|1|1A|G|686
5V8I|1|1A|C|687
5V8I|1|1A|U|688
5V8I|1|1A|A|689
*
5V8I|1|1A|U|773
5V8I|1|1A|A|774
5V8I|1|1A|G|775
*
5V8I|1|1A|C|791
5V8I|1|1A|G|792
5V8I|1|1A|A|793
5V8I|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2