J3_5V8I_007

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V8I_007 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0643

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5V8I|1|1A|C|1298
5V8I|1|1A|G|1299
5V8I|1|1A|U|1300
5V8I|1|1A|A|1301
5V8I|1|1A|A|1302
5V8I|1|1A|G|1303
*
5V8I|1|1A|C|1625
5V8I|1|1A|G|1626
5V8I|1|1A|G|1627
*
5V8I|1|1A|U|1639
5V8I|1|1A|C|1640
5V8I|1|1A|A|1641
5V8I|1|1A|G|1642

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains