J3_5V8I_012

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5V8I|1|1A|A|2518, 5V8I|1|1A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V8I_012 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0674

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5V8I|1|1A|C|2517
5V8I|1|1A|A|2518
5V8I|1|1A|U|2519
5V8I|1|1A|C|2520
*
5V8I|1|1A|G|2545
5V8I|1|1A|U|2546
5V8I|1|1A|U|2547
*
5V8I|1|1A|A|2561
5V8I|1|1A|U|2562
5V8I|1|1A|U|2563
5V8I|1|1A|A|2564
5V8I|1|1A|A|2565
5V8I|1|1A|A|2566
5V8I|1|1A|G|2567

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1N

50S ribosomal protein L13

Chain 1O

50S ribosomal protein L14