J3_5V8I_025
3D structure
- PDB id
- 5V8I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5V8I_025 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.0982
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5V8I|1|1a|U|1073
5V8I|1|1a|G|1074
*
5V8I|1|1a|U|1083
5V8I|1|1a|G|1084
5V8I|1|1a|U|1085
5V8I|1|1a|U|1086
5V8I|1|1a|G|1087
*
5V8I|1|1a|C|1098
5V8I|1|1a|G|1099
5V8I|1|1a|C|1100
5V8I|1|1a|A|1101
5V8I|1|1a|A|1102
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1e
- 30S ribosomal protein S5
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