3D structure

PDB id
5V8I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
UUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5V8I_037 not in the Motif Atlas
Homologous match to J3_7RQB_010
Geometric discrepancy: 0.0583
The information below is about J3_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.3
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

5V8I|1|2A|U|2091
5V8I|1|2A|U|2092
5V8I|1|2A|G|2093
*
5V8I|1|2A|C|2196
5V8I|1|2A|U|2197
5V8I|1|2A|A|2198
5V8I|1|2A|A|2199
5V8I|1|2A|C|2200
*
5V8I|1|2A|G|2223
5V8I|1|2A|G|2224
5V8I|1|2A|A|2225
5V8I|1|2A|C|2226
5V8I|1|2A|A|2227
5V8I|1|2A|G|2228

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L28
Chain 2D
50S ribosomal protein L2
Chain 2I
50S ribosomal protein L9

Coloring options:


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