J3_5V8I_054

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

5V8I|1|2a|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V8I_054 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1065

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5V8I|1|2a|C|1237
5V8I|1|2a|A|1238
5V8I|1|2a|A|1239
5V8I|1|2a|U|1240
5V8I|1|2a|G|1241
*
5V8I|1|2a|C|1296
5V8I|1|2a|C|1297
5V8I|1|2a|C|1298
5V8I|1|2a|A|1299
5V8I|1|2a|G|1300
5V8I|1|2a|U|1301
5V8I|1|2a|U|1302
5V8I|1|2a|C|1303
*
5V8I|1|2a|G|1334
5V8I|1|2a|C|1335
5V8I|1|2a|C|1336
5V8I|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx