J3_5V8I_058

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V8I_058 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0864

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5V8I|1|1A|G|1424
5V8I|1|1A|G|1425
5V8I|1|1A|G|1426
5V8I|1|1A|A|1427
5V8I|1|1A|C|1428
5V8I|1|1A|G|1429
*
5V8I|1|1A|C|1564
5V8I|1|1A|C|1565
*
5V8I|1|1A|G|1568
5V8I|1|1A|A|1569
5V8I|1|1A|A|1570
5V8I|1|1A|A|1571
5V8I|1|1A|A|1572
5V8I|1|1A|G|1573
5V8I|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2