J3_5V8I_065

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

5V8I|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V8I_065 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0771

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5V8I|1|2A|C|297
5V8I|1|2A|G|298
5V8I|1|2A|A|299
5V8I|1|2A|A|300
5V8I|1|2A|G|301
*
5V8I|1|2A|C|316
5V8I|1|2A|G|317
5V8I|1|2A|C|318
5V8I|1|2A|C|319
5V8I|1|2A|A|320
5V8I|1|2A|G|321
5V8I|1|2A|A|322
5V8I|1|2A|G|323
5V8I|1|2A|A|324
5V8I|1|2A|G|325
*
5V8I|1|2A|C|337
5V8I|1|2A|G|338
5V8I|1|2A|U|339
5V8I|1|2A|A|340
5V8I|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24