3D structure

PDB id
5V8I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
5V8I|1|2a|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5V8I_072 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.1338
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5V8I|1|2a|C|1116
5V8I|1|2a|G|1117
5V8I|1|2a|C|1118
*
5V8I|1|2a|G|1155
5V8I|1|2a|G|1156
5V8I|1|2a|A|1157
5V8I|1|2a|C|1158
5V8I|1|2a|U|1159
5V8I|1|2a|G|1160
5V8I|1|2a|C|1161
*
5V8I|1|2a|G|1175
5V8I|1|2a|A|1176
5V8I|1|2a|G|1177
5V8I|1|2a|G|1178
5V8I|1|2a|A|1179
5V8I|1|2a|A|1180
5V8I|1|2a|G|1181
5V8I|1|2a|G|1182
5V8I|1|2a|A|1183
5V8I|1|2a|G|1184

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2b
30S ribosomal protein S2
Chain 2i
30S ribosomal protein S9
Chain 2n
30S ribosomal protein S14 type Z

Coloring options:


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