J3_5V93_007

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

5V93|1|A|A|1515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V93_007 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.321

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5V93|1|A|U|1475
5V93|1|A|C|1476
5V93|1|A|G|1477
5V93|1|A|G|1478
5V93|1|A|G|1479
5V93|1|A|A|1480
5V93|1|A|C|1481
*
5V93|1|A|G|1512
5V93|1|A|A|1513
5V93|1|A|C|1514
5V93|1|A|A|1515
5V93|1|A|A|1516
*
5V93|1|A|U|1533
5V93|1|A|A|1534

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23