J3_5V93_012

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5V93|1|A|A|2756, 5V93|1|A|U|2757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V93_012 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.2017

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5V93|1|A|C|2755
5V93|1|A|A|2756
5V93|1|A|U|2757
5V93|1|A|C|2758
*
5V93|1|A|G|2783
5V93|1|A|U|2784
5V93|1|A|U|2785
*
5V93|1|A|A|2799
5V93|1|A|U|2800
5V93|1|A|U|2801
5V93|1|A|A|2802
5V93|1|A|A|2803
5V93|1|A|A|2804
5V93|1|A|G|2805

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14