J3_5V93_017
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UG*CACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 5V93|1|a|U|714
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5V93_017 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.2268
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5V93|1|a|U|663
5V93|1|a|G|664
*
5V93|1|a|C|708
5V93|1|a|A|709
5V93|1|a|C|710
5V93|1|a|C|711
5V93|1|a|G|712
5V93|1|a|G|713
5V93|1|a|U|714
5V93|1|a|G|715
5V93|1|a|G|716
*
5V93|1|a|C|723
5V93|1|a|G|724
5V93|1|a|G|725
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain o
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S18
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