J3_5V93_019

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V93_019 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1953

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5V93|1|a|C|929
5V93|1|a|A|930
5V93|1|a|A|931
5V93|1|a|G|932
*
5V93|1|a|C|1336
5V93|1|a|U|1337
5V93|1|a|A|1338
5V93|1|a|G|1339
5V93|1|a|U|1340
5V93|1|a|A|1341
5V93|1|a|A|1342
*
5V93|1|a|U|1365
5V93|1|a|G|1366
5V93|1|a|A|1367
5V93|1|a|A|1368
5V93|1|a|U|1369
5V93|1|a|A|1370
5V93|1|a|C|1371
5V93|1|a|G|1372

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9