J3_5V93_041

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCUUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5V93|1|a|U|51, 5V93|1|a|A|53, 5V93|1|a|A|54

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V93_041 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1279

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5V93|1|a|G|49
5V93|1|a|C|50
5V93|1|a|U|51
5V93|1|a|U|52
5V93|1|a|A|53
5V93|1|a|A|54
5V93|1|a|C|55
*
5V93|1|a|G|358
5V93|1|a|G|359
5V93|1|a|G|360
5V93|1|a|G|361
5V93|1|a|A|362
5V93|1|a|A|363
5V93|1|a|U|364
5V93|1|a|A|365
5V93|1|a|U|366
*
5V93|1|a|A|392
5V93|1|a|G|393
5V93|1|a|C|394

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16