J3_5V93_046

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

5V93|1|a|A|1092

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V93_046 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.2115

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5V93|1|a|U|1064
5V93|1|a|G|1065
*
5V93|1|a|U|1074
5V93|1|a|G|1075
5V93|1|a|U|1076
5V93|1|a|U|1077
*
5V93|1|a|G|1090
5V93|1|a|C|1091
5V93|1|a|A|1092
5V93|1|a|A|1093

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5