J3_5V93_049
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GC*GUGAAAAGUAC*GAGUGAAAGAGUACC
- Length
- 28 nucleotides
- Bulged bases
- 5V93|1|A|G|592, 5V93|1|A|A|596, 5V93|1|A|C|597
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5V93_049 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.201
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5V93|1|A|G|30
5V93|1|A|C|31
*
5V93|1|A|G|563
5V93|1|A|U|564
5V93|1|A|G|565
5V93|1|A|A|566
5V93|1|A|A|567
5V93|1|A|A|568
5V93|1|A|A|569
5V93|1|A|G|570
5V93|1|A|U|571
5V93|1|A|A|572
5V93|1|A|C|573
*
5V93|1|A|G|584
5V93|1|A|A|585
5V93|1|A|G|586
5V93|1|A|U|587
5V93|1|A|G|588
5V93|1|A|A|589
5V93|1|A|A|590
5V93|1|A|A|591
5V93|1|A|G|592
5V93|1|A|A|593
5V93|1|A|G|594
5V93|1|A|U|595
5V93|1|A|A|596
5V93|1|A|C|597
5V93|1|A|C|598
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
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