J3_5V93_052

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5V93|1|A|A|1844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V93_052 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.2614

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5V93|1|A|C|1437
5V93|1|A|A|1438
5V93|1|A|A|1439
5V93|1|A|G|1440
*
5V93|1|A|C|1840
5V93|1|A|C|1841
5V93|1|A|C|1842
5V93|1|A|A|1843
5V93|1|A|A|1844
5V93|1|A|A|1845
5V93|1|A|C|1846
*
5V93|1|A|G|1855
5V93|1|A|U|1856
5V93|1|A|G|1857

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34