J3_5VP2_021
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 5VP2|1|1a|A|975, 5VP2|1|1a|G|976, 5VP2|1|1a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VP2_021 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.054
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5VP2|1|1a|U|955
5VP2|1|1a|U|956
5VP2|1|1a|U|957
5VP2|1|1a|A|958
5VP2|1|1a|A|959
5VP2|1|1a|U|960
5VP2|1|1a|U|961
5VP2|1|1a|C|962
*
5VP2|1|1a|G|973
5VP2|1|1a|A|974
5VP2|1|1a|A|975
5VP2|1|1a|G|976
5VP2|1|1a|A|977
5VP2|1|1a|A|978
5VP2|1|1a|C|979
5VP2|1|1a|C|980
5VP2|1|1a|U|981
5VP2|1|1a|U|982
5VP2|1|1a|A|983
5VP2|1|1a|C|984
*
5VP2|1|1a|G|1221
5VP2|1|1a|G|1222
5VP2|1|1a|C|1223
5VP2|1|1a|G|1224
5VP2|1|1a|A|1225
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1j
- 30S ribosomal protein S10
- Chain 1m
- 30S ribosomal protein S13
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1s
- 30S ribosomal protein S19
- Chain 1w
- Transfer RNA; tRNA
Coloring options: