J3_5VP2_077

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGGAAU*GGAACGCCGAUGG*CAG

Length

22 nucleotides

Bulged bases

5VP2|1|2a|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VP2|1|2a|U|672
5VP2|1|2a|G|673
5VP2|1|2a|G|674
5VP2|1|2a|A|675
5VP2|1|2a|A|676
5VP2|1|2a|U|677
*
5VP2|1|2a|G|713
5VP2|1|2a|G|714
5VP2|1|2a|A|715
5VP2|1|2a|A|716
5VP2|1|2a|C|717
5VP2|1|2a|G|718
5VP2|1|2a|C|719
5VP2|1|2a|C|720
5VP2|1|2a|G|721
5VP2|1|2a|A|722
5VP2|1|2a|U|723
5VP2|1|2a|G|724
5VP2|1|2a|G|725
*
5VP2|1|2a|C|732
5VP2|1|2a|A|733
5VP2|1|2a|G|734

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2f

30S ribosomal protein S6

Chain 2k

30S ribosomal protein S11

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18