J3_5VPO_013

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

5VPO|1|QA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPO_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1411

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5VPO|1|QA|C|1237
5VPO|1|QA|A|1238
5VPO|1|QA|A|1239
5VPO|1|QA|U|1240
5VPO|1|QA|G|1241
*
5VPO|1|QA|C|1296
5VPO|1|QA|C|1297
5VPO|1|QA|C|1298
5VPO|1|QA|A|1299
5VPO|1|QA|G|1300
5VPO|1|QA|U|1301
5VPO|1|QA|U|1302
5VPO|1|QA|C|1303
*
5VPO|1|QA|G|1334
5VPO|1|QA|C|1335
5VPO|1|QA|C|1336
5VPO|1|QA|G|1337

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx