J3_5VPO_014

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPO_014 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.069

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5VPO|1|RA|G|30
5VPO|1|RA|C|31
*
5VPO|1|RA|G|474
5VPO|1|RA|U|475
5VPO|1|RA|G|476
5VPO|1|RA|A|477
5VPO|1|RA|A|478
5VPO|1|RA|A|479
5VPO|1|RA|A|480
5VPO|1|RA|G|481
*
5VPO|1|RA|C|509
5VPO|1|RA|C|510

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20

Chain RW

50S ribosomal protein L22

Chain RY

50S ribosomal protein L24