3D structure

PDB id
5VPO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site ASL SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.34 Å

Loop

Sequence
CUC*GAG*UAGAAG
Length
12 nucleotides
Bulged bases
5VPO|1|RA|G|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5VPO_024 not in the Motif Atlas
Homologous match to J3_7RQB_011
Geometric discrepancy: 0.0766
The information below is about J3_7RQB_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.4
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

5VPO|1|RA|C|2295
5VPO|1|RA|U|2296
5VPO|1|RA|C|2297
*
5VPO|1|RA|G|2321
5VPO|1|RA|A|2322
5VPO|1|RA|G|2323
*
5VPO|1|RA|U|2332
5VPO|1|RA|A|2333
5VPO|1|RA|G|2334
5VPO|1|RA|A|2335
5VPO|1|RA|A|2336
5VPO|1|RA|G|2337

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain RB
5S ribosomal RNA; 5S rRNA
Chain RG
50S ribosomal protein L5
Chain RS
50S ribosomal protein L18

Coloring options:


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