J3_5VPO_024
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 5VPO|1|RA|G|2334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VPO_024 not in the Motif Atlas
- Homologous match to J3_7RQB_011
- Geometric discrepancy: 0.0766
- The information below is about J3_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.4
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5VPO|1|RA|C|2295
5VPO|1|RA|U|2296
5VPO|1|RA|C|2297
*
5VPO|1|RA|G|2321
5VPO|1|RA|A|2322
5VPO|1|RA|G|2323
*
5VPO|1|RA|U|2332
5VPO|1|RA|A|2333
5VPO|1|RA|G|2334
5VPO|1|RA|A|2335
5VPO|1|RA|A|2336
5VPO|1|RA|G|2337
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R0
- 50S ribosomal protein L27
- Chain RB
- 5S ribosomal RNA; 5S rRNA
- Chain RG
- 50S ribosomal protein L5
- Chain RS
- 50S ribosomal protein L18
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